已经作为第一或通讯作者发表SCI文章140余篇，其中近5年(2020年至今)发表36篇，部分代表性文章如下：
- Jianfei Chen, Xiuli Chen, Ying Zhu, Shuang Yan, Shuguang Xie* (2024) New insights into bioaugmented removal of sulfamethoxazole in sediment microcosms: Degradation efficiency, ecological risk and microbial mechanisms. Microbiome 12:43
- Yanchu Ke, Wenjun Sun*, Yanei Xue, Ying Zhu, Shuang Yan, Shuguang Xie* (2024) Effects of treatments and distribution on microbiome and antibiotic resistome from source to tap water in three Chinese geographical regions based on metagenome assembly. Water Research 249:120894
- Yanchu Ke, Wenjun Sun*, Zhongyun Chen, Ying Zhu, Xiuli Chen, Shuang Yan, Yangyang Li, Shuguang Xie* (2024) Effects of disinfectant type and dosage on biofilm's activity, viability, microbiome and antibiotic resistome in bench-scale drinking water distribution systems. Water Research 249: 120958
- Xiuli Chen, Ying Zhu, Wenli Zheng, Shuang Yan, Yangyang Li, Shuguang Xie* (2024) Elucidating doxycycline biotransformation mechanism by Chryseobacterium sp. WX1: Multi-omics insights. Journal of Hazardous Materials 469:133975
- Xiuli Chen, Ying Zhu, Shuang Yan, Yangyang Li, Shuguang Xie* (2024) Enhanced tetracycline removal in sequencing batch reactors by bioaugmentation using tetX-carrying strains: Efficiency and mechanisms. Journal of Hazardous Materials 480:136118
- Yanchu Ke, Wenjun Sun*, Xiuli Chen, Ying Zhu, Xu Guo, Weixin Yan, Shuguang Xie* (2023) Seasonality determines the variations of biofilm microbiome and antibiotic resistome in a pilot-scale chlorinated drinking water distribution system deciphered by metagenome assembly. Environmental Science & Technology 57(31):11430-11441
- Yanchu Ke, Wenjun Sun*, Shuming Liu, Ying Zhu, Shuang Yan, Xiuli Chen, Shuguang Xie* (2023) Seasonal variations of biofilm C, N and S cycling genes in a pilot-scale chlorinated drinking water distribution system. Water Research 247:120759
- Xiuli Chen, Ying Zhu, Jianfei Chen, Shuang Yan, Shuguang Xie*(2023) Multi-omic profiling of a novel activated sludge strain Sphingobacterium sp. WM1 reveals the mechanism of tetracycline biodegradation and its merits of potential application Water Research 243:120397
- Jianfei Chen, Yanchu Ke, Ying Zhu, Xiuli Chen, Shuguang Xie* (2023) Deciphering of sulfonamide biodegradation mechanism in wetland sediments: from microbial community and individual populations to pathway and functional genes. Water Research 240:120132
- Ying Zhu, Yi Zhang, Shuang Yan, Xiuli Chen, Shuguang Xie* (2023) Viral community structure and functional potential vary with lifestyle and altitude in soils of Mt. Everest. Environment International 178:108055
- Xiuli Chen, Yanchu Ke, Ying Zhu, Mingbang Xu, Chao Chen, Shuguang Xie* (2023) Enrichment of tetracycline-degrading bacterial consortia: microbial community succession and degradation characteristics and mechanism. Journal of Hazardous Materials 448:130984
- Jianfei Chen, Yuyin Yang, Yanchu Ke, Xiuli Chen, Xinshu Jiang, Chao Chen, Shuguang Xie* (2022) Sulfonamide-metabolizing microorganisms and mechanisms in antibiotic-contaminated wetland sediments revealed by stable isotope probing and metagenomics. Environment International 165:107332
- Jianfei Chen, Yuyin Yang, Yanchu Ke, Xiuli Chen, Xinshu Jiang, Chao Chen, Shuguang Xie* (2022) Anaerobic sulfamethoxazole-degrading bacterial consortia in antibiotic-contaminated wetland sediments identified by DNA-stable isotope probing and metagenomics analysis. Environmental Microbiology 24(8):3751-3763
- Yuyin Yang, Jianfei Chen, Xiuli Chen, Qingsong Jiang, Yong Liu, Shuguang Xie* (2021) Cyanobacterial bloom induces structural and functional succession of microbial communities in eutrophic lake sediments. Environmental Pollution 284:117157
- Jianfei Chen, Tianli Tong, Xinshu Jiang, Shuguang Xie* (2020) Biodegradation of sulfonamides in both oxic and anoxic zones of vertical flow constructed wetland and the potential degraders. Environmental Pollution 265:115040