科研成果 by Year: 2013

2013
Yang M, Zhao R, Wang J, Zhang L, Xie Q, Liu Z, Liu Z. Bandgap opening in Janus-type mosaic graphene. Journal of Applied Physics. 2013;(8).
Mao X, Lang X, Wang Z, Hao Q, Wen B, Ren Z, Dai D, Zhou C, Liu L-M, Yang X. Band-Gap states of TiO2(110): Major contribution from surface defects. Journal of Physical Chemistry Letters. 2013;(22):3839-3844.
Li F. Bayesian Modeling of Conditional Densities. [Internet]. 2013. 访问链接Abstract
This thesis develops models and associated Bayesian inference methods for flexible univariate and multivariate conditional density estimation. The models are flexible in the sense that they can capture widely differing shapes of the data. The estimation methods are specifically designed to achieve flexibility while still avoiding overfitting. The models are flexible both for a given covariate value, but also across covariate space. A key contribution of this thesis is that it provides general approaches of density estimation with highly efficient Markov chain Monte Carlo methods. The methods are illustrated on several challenging non-linear and non-normal datasets. In the first paper, a general model is proposed for flexibly estimating the density of a continuous response variable conditional on a possibly high-dimensional set of covariates. The model is a finite mixture of asymmetric student-t densities with covariate-dependent mixture weights. The four parameters of the components, the mean, degrees of freedom, scale and skewness, are all modeled as functions of the covariates. The second paper explores how well a smooth mixture of symmetric components can capture skewed data. Simulations and applications on real data show that including covariate-dependent skewness in the components can lead to substantially improved performance on skewed data, often using a much smaller number of components. We also introduce smooth mixtures of gamma and log-normal components to model positively-valued response variables. In the third paper we propose a multivariate Gaussian surface regression model that combines both additive splines and interactive splines, and a highly efficient MCMC algorithm that updates all the multi-dimensional knot locations jointly. We use shrinkage priors to avoid overfitting with different estimated shrinkage factors for the additive and surface part of the model, and also different shrinkage parameters for the different response variables. In the last paper we present a general Bayesian approach for directly modeling dependencies between variables as function of explanatory variables in a flexible copula context. In particular, the Joe-Clayton copula is extended to have covariate-dependent tail dependence and correlations. Posterior inference is carried out using a novel and efficient simulation method. The appendix of the thesis documents the computational implementation details.
Song S, Qi T, Fan M, Zhang X, Gao H, Huang H, Wu D, Guo H, Xie D. The bHLH Subgroup IIId Factors Negatively Regulate Jasmonate-Mediated Plant Defense and Development. PLoS Genetics [Internet]. 2013;(7). 访问链接
Feng L, Hong S, Rong J, You Q, Dai P, Huang R, Tan Y, Hong W, Xie C, Zhao J, et al. Bifunctional unnatural sialic acids for dual metabolic labeling of cell-surface sialylated glycans. Journal of the American Chemical Society [Internet]. 2013;(25):9244-9247. 访问链接
Yuan Y, Pei J, Lai L. Binding site detection and druggability prediction of protein targets for structure-based drug design. Current Pharmaceutical Design [Internet]. 2013;(12):2326-2333. 访问链接
Wen D, Zhang J, Xiong R, Liu R, Chen L. Bioaugmentation with a pyridine-degrading bacterium in a membrane bioreactor treating pharmaceutical wastewater. Journal of Environmental Sciences [Internet]. 2013;25(11):2265-2271. 访问链接
Xiao R-P. Bioimaging for cardiometabolic translational medicine: From cellular messengers to organism function. Journal of Molecular Medicine [Internet]. 2013;(8):905-906. 访问链接
Lin L, Tian X, Hong S, Dai P, You Q, Wang R, Feng L, Xie C, Tian Z-Q, Chen X. A bioorthogonal raman reporter strategy for SERS detection of glycans on live cells. Angewandte Chemie - International Edition [Internet]. 2013;(28):7266-7271. 访问链接
Wang Q, Shen B, Zheng P, Feng H, Guo Y, Cao W, Chen L, Liu X, Zhao G, Xu S, et al. BmCREC is an endoplasmic reticulum (ER) resident protein and required for ER/golgi morphology. Journal of Biological Chemistry [Internet]. 2013;(37):26649-26657. 访问链接
Xu Y, Zhang Y, Wu B. Bright solitons in spin-orbit-coupled Bose-Einstein condensates. Physical Review A - Atomic, Molecular, and Optical Physics. 2013;(1).
Liu HL, Xu FR. Calculations of electric quadrupole moments and charge radii for high-K isomers. Science China Physics, Mechanics and Astronomy [Internet]. 2013;56:2037-2041. 访问链接
Feng H, Chen L, Wang Q, Shen B, Liu L, Zheng P, Xu S, Liu X, Chen J, Teng J. Calumenin-15 facilitates filopodia formation by promoting TGF-b superfamily cytokine GDF-15 transcription. Cell Death and Disease [Internet]. 2013;(10). 访问链接
Loyalka P, Liu C, Song Y, Yi* H, Huang X, Wei J, Zhang L, Shi Y, Chu J, Rozelle S. Can information and counseling help students from poor rural areas go to high school? evidence from china. Journal of Comparative Economics. 2013;41:1012-1025.
Mo D, Swinnen J, Zhang L, Yi H, Qu Q, Boswell M, Rozelle S. Can One-to-One Computing Narrow the Digital Divide and the Educational Gap in China? The Case of Beijing Migrant Schools. World Development. 2013;46:14-29.
Samur MK, Yan Z, Wang X, Cao Q, Munshi NC, Li C, Shah PK. canEvolve: A Web Portal for Integrative Oncogenomics. [Internet]. 2013;(2). 访问链接
Whelan RS, Konstantinidis K, Xiao R-P, Kitsis RN. Cardiomyocyte life-death decisions in response to chronic β-adrenergic signaling. Circulation Research [Internet]. 2013;(3):408-410. 访问链接
Xie R, Hong S, Chen X. Cell-selective metabolic labeling of biomolecules with bioorthogonal functionalities. Current Opinion in Chemical Biology [Internet]. 2013;(5):747-752. 访问链接
Song R, Peng W, Zhang Y, Lv F, Wu H-K, Guo J, Cao Y, Pi Y, Zhang X, Jin L, et al. Central role of E3 ubiquitin ligase MG53 in insulin resistance and metabolic disorders. Nature [Internet]. 2013;(7437):375-379. 访问链接
Song R, Peng W, Zhang Y, Lv F, Wu H-K, Guo J, Cao Y, Pi Y, Zhang X, Jin L, et al. Central role of E3 ubiquitin ligase MG53 in insulin resistance and metabolic disorders. [Internet]. 2013;(7437):375-379. 访问链接

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