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Song K, Ren J, Reinert G, Deng M, Waterman MS, Sun F. New developments of alignment-free sequence comparison: Measures, statistics and next-generation sequencing. Briefings in Bioinformatics. 2014;(3):343-353. SCI被引用次数：87.

Wang Y, Wang L, Yang D, Deng M. Imputing missing values for genetic interaction data. Methods. 2014;(3):269-277. SCI被引用次数：3.

Su N, Dai D, Deng C, Qian M, Deng M. Using graphical adaptive lasso approach to construct transcription factor and microRNA's combinatorial regulatory network in breast cancer. IET systems biology [Internet]. 2014;(3):87-95. 访问链接 SCI被引用次数：3.

Wu X, Liu H, Wang Y, Deng M. Prolonged limitation of tree growth due to warmer spring in semi-arid mountain forests of Tianshan, Northwest China. Environmental Research Letters. 2013;(2). SCI被引用次数：25.

Song K, Ren J, Zhai Z, Liu X, Deng M, Sun F. Alignment-free sequence comparison based on next-generation sequencing reads. Journal of Computational Biology [Internet]. 2013;(2):64-79. 访问链接 SCI被引用次数：53.

Wang L, Zheng W, Zhao H, Deng M. Statistical Analysis Reveals Co-Expression Patterns of Many Pairs of Genes in Yeast Are Jointly Regulated by Interacting Loci. PLoS Genetics [Internet]. 2013;(3). 访问链接 SCI被引用次数：44.

Ren J, Song K, Sun F, Deng M, Reinert G. Multiple alignment-free sequence comparison. Bioinformatics [Internet]. 2013;(21):2690-2698. 访问链接 SCI被引用次数：9.

Wang F, Chen R, Ji D, Bai SN, Qian M, Deng M. Adjustment method for microarray data generated using two-cycle RNA labeling protocol. BMC Genomics [Internet]. 2013;(1). 访问链接

Jiang B, Song K, Ren J, Deng M, Sun F, Zhang X. Comparison of metagenomic samples using sequence signatures. BMC Genomics [Internet]. 2012;(1). 访问链接 SCI被引用次数：52.

Hou L, Wang L, Berg A, Qian M, Zhu Y, Li F, Deng M. Comparison and evaluation of network clustering algorithms applied to genetic interaction networks. Frontiers in Bioscience - Elite [Internet]. 2012;(6):2150-2161. 访问链接

Wang L, Hou L, Qian M, Deng M. Integrating phosphorylation network with transcriptional network reveals novel functional relationships. PLoS ONE [Internet]. 2012;(3). 访问链接

Wang Q, Peng P, Qian M, Wan L, Deng M. Hybridization and amplification rate correction for affymetrix SNP arrays. BMC Medical Genomics [Internet]. 2012. 访问链接 SCI被引用次数：4.

Kang Y, Deng R, Wang C, Deng T, Peng P, Cheng X, Wang G, Qian M, Gao H, Han B, et al. Etiologic diagnosis of lower respiratory tract bacterial infections using Sputum samples and quantitative loop-mediated isothermal amplification. PLoS ONE [Internet]. 2012;(6). 访问链接 SCI被引用次数：21.

Wang Q, Qu J, Cheng X, Kang Y, Wan L, Qian M, Deng M. A study of biases of DNA copy number estimation based on PICR model. Frontiers of Mathematics in China. 2011;(6):1203-1216. SCI被引用次数：2.

Hou L, Wang L, Qian M, Li D, Tang C, Zhu Y, Deng M, Li F. Modular analysis of the probabilistic genetic interaction network. Bioinformatics [Internet]. 2011;(6):853-859. 访问链接 SCI被引用次数：6.

Wang L, Hou L, Qian M, Li F, Deng M. Integrating multiple types of data to predict novel cell cycle-related genes. BMC Systems Biology [Internet]. 2011;(SUPPL. 1). 访问链接 SCI被引用次数：4.

Lu Y, Zhou Y, Qu W, Deng M, Zhang C. A Lasso regression model for the construction of microRNA-target regulatory networks. Bioinformatics [Internet]. 2011;(17):2406-2413. 访问链接 SCI被引用次数：88.

Cai X, Hou L, Su N, Hu H, Deng M, Li X. Systematic identification of conserved motif modules in the human genome. BMC Genomics [Internet]. 2010;(1). 访问链接 SCI被引用次数：21.

Wei D, Zheng H, Su N, Deng M, Lai L. Binding energy landscape analysis helps to discriminate true hits from high-scoring decoys in virtual screening. Journal of Chemical Information and Modeling [Internet]. 2010;(10):1855-1864. 访问链接 SCI被引用次数：20.