Su N, Wang Y, Qian M, Deng M. Combinatorial regulation of transcription factors and microRNAs. BMC Systems Biology [Internet]. 2010. 访问链接

Han F, Wu J, Xu J, Deng M. Searching for differentially expressed genes by PLS-VIP method. Beijing Daxue Xuebao (Ziran Kexue Ban)/Acta Scientiarum Naturalium Universitatis Pekinensis. 2009;(1):1-5.

Duan S, Wan L, Fu WJ, Pan H, Ding Q, Chen C, Han P, Zhu X, Du L, Liu H, et al. Nonlinear cooperation of p53-ING1-induced bax expression and protein S-nitrosylation in GSNO-induced thymocyte apoptosis: A quantitative approach with cross-platform validation. Apoptosis [Internet]. 2009;(2):236-245. 访问链接

Zheng H, Hang X, Zhu J, Qian M, Qu W, Zhang C, Deng M. REMAS: A new regression model to identify alternative splicing events from exon array data. BMC Bioinformatics [Internet]. 2009;(SUPPL. 1). 访问链接

Wang Q, Wan L, Li D, Zhu L, Qian M, Deng M. Searching for bidirectional promoters in Arabidopsis thaliana. BMC Bioinformatics [Internet]. 2009;(SUPPL. 1). 访问链接

Hang X, Li P, Li Z, Qu W, Yu Y, Li H, Shen Z, Zheng H, Gao Y, Wu Y, et al. Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array. BMC Genomics [Internet]. 2009. 访问链接

Hou L, Qian M-P, Zhu Y-P, Deng M-H. Advances on bioinformatic research in transcription factor binding sites. Yi chuan = Hereditas / Zhongguo yi chuan xue hui bian ji [Internet]. 2009;(4):365-373. 访问链接

Wan L, Li D, Zhang D, Liu X, Fu WJ, Zhu L, Deng M, Sun F, Qian M. Conservation and implications of eukaryote transcriptional regulatory regions across multiple species. BMC Genomics [Internet]. 2008. 访问链接

Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, et al. A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biology [Internet]. 2008;(SUPPL. 1). 访问链接

Tan X-J, Zhang Y-X, Qian M-P, Zhang Y-Y, Deng M-H. The comparison of different normalization methods in microarray data. Progress in Biochemistry and Biophysics. 2007;(6):625-633.

Yang L-H, Lü P-M, Chen L-J, Deng M-H. A k-gram approach for identifying microRNA precursors. Progress in Biochemistry and Biophysics. 2007;(2):154-161.

Zhang Y, Qian M, Ouyang Q, Deng M, Li F, Tang C. Stochastic model of yeast cell-cycle network. Physica D: Nonlinear Phenomena. 2006;(1):35-39.

Lee H, Tu Z, Deng M, Sun F, Chen T. Diffusion kernel-based logistic regression models for protein function prediction. OMICS A Journal of Integrative Biology [Internet]. 2006;(1):40-55. 访问链接

Lee H, Deng M, Sun F, Chen T. An integrated approach to the prediction of domain-domain interactions. BMC Bioinformatics [Internet]. 2006. 访问链接

Yan X, Deng M, Fung WK, Qian M. Detecting differentially expressed genes by relative entropy. Journal of Theoretical Biology [Internet]. 2005;(3):395-402. 访问链接

Feng X-C, Qian M-P, Deng M-H, Ma X-T, Yan X-T. Application of hidden semi-markov model to 3′ splice sites identification. Progress in Biochemistry and Biophysics. 2004;(5):455-458.

Deng M, Tu Z, Sun F, Chen T. Mapping gene ontology to proteins based on protein-protein interaction data. Bioinformatics [Internet]. 2004;(6):895-902. 访问链接

Lanckriet GR, Deng M, Cristianini N, Jordan MI, Noble WS. Kernel-based data fusion and its application to protein function prediction in yeast. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Internet]. 2004:300-311. 访问链接

Deng M, Chen T, Sun F. An integrated probabilistic model for functional prediction of proteins. Journal of Computational Biology [Internet]. 2004;(2-3):463-475. 访问链接

Deng M, Sun F, Chen T. Assessment of the reliability of protein-protein interactions and protein function prediction. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Internet]. 2003:140-151. 访问链接