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科研成果

2022
Comparison of the pulmonary microbiome between patients with carbapenem-resistant Acinetobacter baumannii colonization and ventilator-associated pneumonia: a prospective cohort study. Frontiers in Microbiology [Internet]. 2022;13(782210). 访问链接
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes. Bioinformatics [Internet]. 2022;38(2):543-545. 访问链接
Integrated Traditional Chinese Medicine Improves Functional Outcome in Acute Ischemic Stroke: from Clinic to Mechanism Exploration with Gut Microbiota. Frontiers in Cellular and Infection Microbiology [Internet]. 2022;12(827129). 访问链接
2021
Development of a one-step multiplex PCR assay for differential detection of four species (Enterobacter cloacae, Enterobacter hormaechei, Enterobacter roggenkampii and Enterobacter kobei) belonging to Enterobacter cl. Frontiers in Cellular and Infection Microbiology [Internet]. 2021;2021(677089). 访问链接
Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach. GigaScience [Internet]. 2021;10(9):giab056. 访问链接
Gut microbiota-related effects of Tanhuo decoction in acute ischemic stroke. Oxidative Medicine and Cellular Longevity [Internet]. 2021;2021(5596924). 访问链接
LightCUD: a program for diagnosing IBD based on human gut microbiome data. BioData Mining [Internet]. 2021;14(1):2. 访问链接
Predicting hosts based on early SARS-CoV-2 samples and analyzing the 2020 pandemic. Scientific Report [Internet]. 2021;2021(11):17422. 访问链接
2020
Multiomics study of gut bacteria and host metabolism in irritable bowel syndrome and depression patients. Frontiers in Cellular and Infection Microbiology [Internet]. 2020;2020(10):580980. 访问链接
NanoReviser: an error-correction tool for nanopore sequencing based on a deep learning algorithm. Frontiers in Genetics [Internet]. 2020;2020(11):900. 访问链接
Fang ZC, Tan J, Wu SF, Li M, Hwang C, Liu YC, Zhu HQ. PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning. Bioinformatics [Internet]. 2020;36:3239-3241. 访问链接
2019
Fang ZC, Tan J, Wu SF, Li M, Xu CM, Xie ZJ, Zhu HQ. PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning. Gigascience [Internet]. 2019;8. 访问链接
2014
Zhu H, Wang Q. Prediction of translation initiation site in bacterial and Archaeal genomes. Current Bioinformatics. 2014;(2):155-165.
2013
Liu Y, Guo J, Hu G, Zhu H. Gene prediction in metagenomic fragments based on the SVM algorithm. BMC Bioinformatics [Internet]. 2013;(SUPPL.5). 访问链接
2012
Lai B, Ding R, Li Y, Duan L, Zhu H. A de novo metagenomic assembly program for shotgun DNA reads. Bioinformatics [Internet]. 2012;(11):1455-1462. 访问链接
2011
Wu W-Q, Zheng X-B, Liu Y-C, Tang K, Zhu H-Q. Operon prediction based on an iterative self-learning algorithm. Progress in Biochemistry and Biophysics. 2011;(7):642-651.
Zheng X, Hu G-Q, She Z-S, Zhu H. Leaderless genes in bacteria: Clue to the evolution of translation initiation mechanisms in prokaryotes. BMC Genomics [Internet]. 2011. 访问链接
Zhang C, Wang J, Hua X, Fang J, Zhu H, Gao X. A mutation degree model for the identification of transcriptional regulatory elements. BMC Bioinformatics [Internet]. 2011. 访问链接
Lai B, Ding R, Zhu H. A de novo assembly method for metagenomic DNA reads with mate pairs. Proceedings - 2011 4th International Conference on Biomedical Engineering and Informatics, BMEI 2011. 2011:1562-1566.
Liu Y, Guo J, Zhu H. Gene prediction in metagenomic fragments based on the SVM algorithm. Proceedings - 2011 4th International Conference on Biomedical Engineering and Informatics, BMEI 2011. 2011:1738-1742.

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