Zhu H, Hu G-Q, Yang Y-F, Wang J, She Z-S. MED: A new non-supervised gene prediction algorithm for bacterial and archaeal genomes. BMC Bioinformatics [Internet]. 2007. 访问链接 SCI被引用次数：39.

Yang Z, O'Brien JD, Zheng X, Zhu H-Q, She Z-S. Tree and rate estimation by local evaluation of heterochronous nucleotide data. Bioinformatics [Internet]. 2007;(2):169-176. 访问链接 SCI被引用次数：13.

Zhu H-Q, Hu G-Q, Ouyang Z-Q, Wang J, She Z-S. Accuracy improvement for identifying translation initiation sites in microbial genomes. Bioinformatics [Internet]. 2004;(18):3308-3317. 访问链接 SCI被引用次数：42.

Xue W, Wang J, Shen Z, Zhu H. Enrichment of transcriptional regulatory sites in non-coding genomic region. Bioinformatics [Internet]. 2004;(4):569-575. 访问链接 SCI被引用次数：8.

Ouyang Z, Zhu H, Wang J, She Z-S. Multivariate entropy distance method for prokaryotic gene identification. Journal of Bioinformatics and Computational Biology [Internet]. 2004;(2):353-373. 访问链接

Zhu H, Xie J, Wu J. A novel visualization scheme based on NNI method for highly irregular scattered data. Proceedings of the Sixth International Conference for You Computer Scientist: in Computer Science and Technology in New Century. 2001:434-438.