Zhang Y, Qian M, Ouyang Q, Deng M, Li F, Tang C. Stochastic model of yeast cell-cycle network. Physica D: Nonlinear Phenomena. 2006;(1):35-39.

Lee H, Tu Z, Deng M, Sun F, Chen T. Diffusion kernel-based logistic regression models for protein function prediction. OMICS A Journal of Integrative Biology [Internet]. 2006;(1):40-55. 访问链接

Lee H, Deng M, Sun F, Chen T. An integrated approach to the prediction of domain-domain interactions. BMC Bioinformatics [Internet]. 2006. 访问链接

Yan X, Deng M, Fung WK, Qian M. Detecting differentially expressed genes by relative entropy. Journal of Theoretical Biology [Internet]. 2005;(3):395-402. 访问链接

Huan Y, Minghua D. ClustalY: Speed up the guide tree building for ClustalW. Proceedings - Eighth International Conference on High-Performance Computing in Asia-Pacific Region, HPC Asia 2005. 2005:608-610.

Feng X-C, Qian M-P, Deng M-H, Ma X-T, Yan X-T. Application of hidden semi-markov model to 3′ splice sites identification. Progress in Biochemistry and Biophysics. 2004;(5):455-458.

Deng M, Chen T, Sun F. An integrated probabilistic model for functional prediction of proteins. Journal of Computational Biology [Internet]. 2004;(2-3):463-475. 访问链接

Lanckriet GR, Deng M, Cristianini N, Jordan MI, Noble WS. Kernel-based data fusion and its application to protein function prediction in yeast. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Internet]. 2004:300-311. 访问链接

Deng M, Tu Z, Sun F, Chen T. Mapping gene ontology to proteins based on protein-protein interaction data. Bioinformatics [Internet]. 2004;(6):895-902. 访问链接

Deng M, Sun F, Chen T. Assessment of the reliability of protein-protein interactions and protein function prediction. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing [Internet]. 2003:140-151. 访问链接

Deng M, Zhang K, Mehta S, Chen T, Sun F. Prediction of Protein Function Using Protein-Protein Interaction Data. Journal of Computational Biology [Internet]. 2003;(6):947-960. 访问链接

Deng M, Chen T, Sun F. An integrated probabilistic model for functional prediction of proteins. Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB. 2003:95-103.

Deng M, Zhang K, Mehta S, Chen T, Sun F. Prediction of protein function using protein-protein interaction data. Proc IEEE Comput Soc Bioinform Conf [Internet]. 2002:197-206. 访问链接

Zhang K, Deng M, Chen T, Waterman MS, Sun F. A dynamic programming algorithm for haplotype block partitioning. Proceedings of the National Academy of Sciences of the United States of America [Internet]. 2002;(11):7335-7339. 访问链接

Deng M, Mehta S, Sun F, Chen T. Inferring domain-domain interactions from protein-protein interactions. Genome Research [Internet]. 2002;(10):1540-1548. 访问链接

Deng M, Mehta S, Sun F, Chen T. Inferring domain-domain interactions from protein-protein interactions. Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB. 2002:117-126.

Qian M, Deng M. Segmentation of connected image based on phase locking. Communications in Nonlinear Science and Numerical Simulation. 1996;(3):32-36.