科研成果

2024
Zhu Y, Ding W, Chen Y, Shan Y, Liu C, Fan* X, Lin* S, Chen* PR. Genetically encoded bioorthogonal tryptophan decaging in living cells. Nature Chemistry. 2024.Abstract
Tryptophan (Trp) plays a critical role in the regulation of protein structure, interactions and functions through its π system and indole N–H group. A generalizable method for blocking and rescuing Trp interactions would enable the gain-of-function manipulation of various Trp-containing proteins in vivo, but generating such a platform remains challenging. Here we develop a genetically encoded N1-vinyl-caged Trp capable of rapid and bioorthogonal decaging through an optimized inverse electron-demand Diels–Alder reaction, allowing site-specific activation of Trp on a protein of interest in living cells. This chemical activation of a genetically encoded caged-tryptophan (Trp-CAGE) strategy enables precise activation of the Trp of interest underlying diverse important molecular interactions. We demonstrate the utility of Trp-CAGE across various protein families, such as catalase-peroxidases and kinases, as translation initiators and posttranslational modification readers, allowing the modulation of epigenetic signalling in a temporally controlled manner. Coupled with computer-aided prediction, our strategy paves the way for bioorthogonal Trp activation on more than 28,000 candidate proteins within their native cellular settings.
Zhou Y, Liang Z, Zhu R, Huang Q, Tang K, HUANG R. HAO+Al2O3 FeFET Gate-Stack for Overall Improvement in Operating Voltage, Endurance, and Retention. IEEE Transactions on Electron Devices. 2024:1-7.
Yuan TX; YW; Y. Health benefits from improved air quality: Evidence from the pollution regulations in China’s “2+26” cities. Environmental and Resource Economics [Internet]. 2024;87:1175-1221. 访问链接Abstract
This study assesses the health benefits of better air quality by examining the causal impact of China’s stringent “2+26” regional air pollution control policy on local air quality and population health. Employing a spatial regression discontinuity design that capitalizes on the policy’s location-specific features, we present compelling evidence that the 2+26 policy results in an average reduction of 12.2 units in the local Air Quality Index (AQI) and a 47.0% decrease in per capita medical expenditure from 2014 to 2018. A one-unit reduction in AQI corresponds to a 0.88% reduction in per capita annual medical spending, equivalent to RMB 30.2 (US$4.6). These health gains stem from reduced chronic disease prevalence and improved subjective well-being. Nationally, air quality improvement during 2014–2018 could save RMB 674billion (US$104billion) annually in national direct medical costs, constituting 11.6% of national medical expenditure in 2018. Our findings underscore the substantial health and welfare gains achievable through pollution controls in developing countries.
Xue T, Wang R, Wang M, Wang Y, Tong D, Meng X, Huang C, Ai S, Li F, Cao J, et al. Health benefits from the rapid reduction in ambient exposure to air pollutants after China's clean air actions: progress in efficacy and geographic equality. National Science Review [Internet]. 2024;57(13):5349-5357. 访问链接
Wu C-Y. Heracleote and Amastrian Connectedness: External Prosopographies (and Coins), in AIA/SCS Joint Annual Meeting January 4th-7th, 2024. Chicago, IL., USA; 2024.Abstract
This paper considers the connectedness of the two ports-of-call of Amastris and Heraclea Pontica in the eparcheia of Pontus during the Roman principate. Stanford's ORBIS platform offers a heuristic model of connectedness. We find the two ports-of-call the most popular segments along the south for maritime traffic coming from eastern Pontus and the Bosporus.Where the two is most different concerns their connections with the interior. Heraclea Pontica connected Ancyra to the Pontic coast, while Amastris had none. ORBIS is understandably non- granular in the sense that it "restrict[s] coverage to the more important elements of the Roman communication system," but if this is the case, it means that Heraclea Pontica and Amastris were connected in other ways as well, and the Amastrian mountainous interior, which couldbe described as the "previously unconjoined, or at least the previously less well-connected" segment of Anatolia (Horden 2020: 204), could have also been connected with the wider ancient Mediterranean world. Low visibility of settlements beyond known the one known urbanized area in modern Amasra makes discussions of broader connectedness difficult, but at least from recent field survey results suggest that the number and vibrancy of settlements likely increased in the Roman period (Bes 2015: 288-289; Çam et al. 2019; Çam 2021). The question then is whether recent studies contribute to a new assessment of Amastrian connectedness, and how it compares with existing impressions of both Amastris and its peer poleis, with Heraclea Pontica serving as the primary example.Building upon Alexandru Avram's assumption that the aggregate of attestations of persons who have spent time in a city other than their homeland can serve as proxy for gauging their mobility (Avram 2013: 7-8), this paper uses the Prosopographia Ponti Euxini externa to test whether Amastrian connectedness reached currently unknown areas, particularly theinterior. Comparison between Amastrian data (n=136) and Heracleote specimens (n=1101)  may seem disproportionate, but this paper focuses on persons from the first to the third centuries CE and privileges locations instead of volumes so to visualize connectedness in the Roman world. The same concept is applied to persons of locales beyond the two subjects in question – foreigners who left records in Heracleote (n=5) and Amastrian territory (n=11) – and visualized together. In addition, though coins are a poor proxy as they may be transmitted in a variety of ways that do not reflect direct connections between Amastris and the cities that issued them, this paper considers coins from the Amasra Museum as published by Stanley Ireland and Soner Atesogullari (1996) to complement Amastris relatively poor prosopographical record and increase the potential to capture connections. The overall impression gleaned from this exercise is that Amastris could have played a comparable (though potentially less pronounced) role as that of Heraclea Pontica in terms of a hub-like node that connected interior land routes with maritime traffic, particularly for Hadrianopolis and Pompeiopolis (Corsten 2007; Ruscu 2017), but also potentially for centers such as Caesarea in Cappadocia.Bibliography:Avram, A. 2013. Prosopographia Ponti Euxini externa. Leuven.Bes, P. 2015. "The Cide-Şenpazar Region in the Roman Period," in Kinetic Landscapes. The Cide Archaeological Project: Surveying the Turkish Western Black Sea Region, Bleda Düring and Claudia Glatz, eds., Warsaw/Berlin, pp. 260-293.Çam, F. et al. 2019. "New Archaeological Expeditions in the Ancient City of Amastris,"Settlements and Necropoleis of the Black Sea and its Hinterland in Antiquity, Select Papers from the Third International Conference 'The Black Sea in Antiquity and Tekkeköy: An Ancient Settlement on the Southern Black Sea Coast', 27-29 October 2017, Tekkeköy, Samsun, Gocha Tsetskhladze and Sümer Atasoy, eds., Oxford, pp. 190-207.Çam, F. 2022. "Ancient Settlements in Bartin Province: 2017-2019 Research Results," in Bartın İli ve İlçeleri Yüzey Araştırması (Biya) İlk Tespitler ve Belgeler - Paphlagonia'dan Parthenios'a - I, Fatima Çam, ed., Istanbul, pp. 13-112.Corsten, T. 2007. "Prosoporaphische und Onomastische Notizen III," Gephyra 4, pp. 133-144. Horden, P. 2020. "Knitting Together the Unconjoined," Zeitschrift für Ethnologie 145.2 (2020)197-218.Irland, S. and Soner Atesogul. 1996. "The Ancient Coins in the Amasra Museum," in Studies in Ancient Coinage from Turkey, Richard Ashton, ed., London, pp. 115-137.Ruscu, L. 2017. "Über Sex. Vibius Gallus aus Amastris," Journal of Historical Researches 28, pp. 52-68.
Hu Y*, Zhang S, Zhou Z, Cao Z. Heterogeneous Coprecipitation of Nanocrystals with Metals on Substrates. Accounts of Chemical Research (Cover Article) [Internet]. 2024;57(9):1254-1263. LinkAbstract
The heterogeneous coprecipitation of nanocrystals with metals on substrates plays a significant role in both natural and engineered systems. Due to the small dimensions and thereby the large specific surface area, nanocrystal coprecipitation with metals, which is ubiquitous in natural settings, exerts drastic effects on the biogeochemical cycling of metals on the earth’s crust. Meanwhile, the controlled synthesis of nanocrystals with metal doping to achieve tunable size/composition enables their broad applications as adsorbents and catalysts in many engineered settings. Despite their importance, complex interactions among aqueous ions/polymers, nanocrystals, substrates, and metals are far from being well-understood, leaving the controlling mechanisms for nanocrystal formation with metals on substrates uncovered. In this Account, we discuss our systematic investigation over the past 10 years of the heterogeneous formation of representative nanocrystals with metals on typical substrates. We chose Fe(OH)3 and BaSO4 as representative nanocrystals. Mechanisms for varied metal coprecipitation were also investigated for both types of nanocrystals (i.e., Fe, Al, Cr, Cu, and Pb)(OH)3 and (Ba, Sr)(SO4, SeO4, and SeO3)). Bare SiO2 and Al2O3, as well as those coated with varied organics, were selected as geologically or synthetically representative substrates. Through the integration of state-of-the-art nanoscale interfacial characterization techniques with theoretical calculations, the complex interactions during nanocrystal formation at interfaces were probed and the controlling mechanisms were identified. For BaSO4 and Fe(OH)3 formation on substrates, the local supersaturation levels near substrates were controlled by Ba2+ adsorption and the electrostatic attraction of Fe(OH)3 monomer/polymer to substrates, respectively. Meanwhile, substrate hydrophobicity controlled the interfacial energy for the nucleation of both nanocrystals on (in)organic substrates. Metal ions’ (i.e., Cr/Al/Cu/Pb) hydrolysis constants and substrates’ dielectric constants controlled metal ion adsorption onto substrates, which altered the surface charges of substrates, thus controlling heterogeneous Fe(OH)3 nanocrystal formation on substrates by electrostatic interactions. The sizes and compositions of heterogeneous (Fe, Cr)(OH)3 and (Ba, Sr)(SO4, SeO4, SeO3) formed on substrates were found to be distinct from those of homogeneous precipitates formed in solution. The substrate (de)protonation could alter the local solution’s pH and the substrates’ surface charge; substrates could also adsorb cations, affecting local Fe/Cr/Ba/Sr ion concentrations at solid–water interfaces, thus controlling the amount/size/composition of nanocrystals by tuning their nucleation/growth/deposition on substrates. From slightly supersaturated solution, homogeneous coprecipitates of microsized (Ba, Sr)(SO4, SeO4, SeO3) formed through growth, with little Sr/Se(VI) incorporation due to higher solubilities of SrSO4 and BaSeO4 over BaSO4. While cation enrichment near substrates made the local solution highly supersaturated, nanosized coprecipitates formed on substrates through nucleation, with more Sr/Se(VI) incorporation due to lower interfacial energies of SrSO4 and BaSeO4 over BaSO4. The new insights gained advanced our understanding of the biogeochemical cycling of varied elements at solid–water interfaces and of the controlled synthesis of functional nanocrystals.
Dong Y, Liu X, Bai K, Li G, Wu M, Jing Y, Zhang Y, Zhan P, Zhang Y, Ma Y, et al. A Heterogeneous TinyML SoC with Energy-Event-Performance-Aware Management and Compute-in-Memory Two-Stage Event-Driven Wakeup, in IEEE Symposium on VLSI Technology & Circuits (VLSI).; 2024.
Dong Y, Liu X, Bai K, Li G, Wu M, Jing Y, Zhang Y, Zhan P, Zhang Y, Ma Y, et al. A Heterogeneous TinyML SoC with Energy-Event-Performance-Aware Management and Compute-in-Memory Two-Stage Event-Driven Wakeup. IEEE Symposium on VLSI Technology and Circuits (VLSI-C) [Internet]. 2024. Links
Sheng M, Zhang P. “How I Form and Escape Information Cocoons”: An Interview Study of Users on Short Video Apps. International Conference on Information. 2024:129-138.
Xu L, Bai X, Li K, Zhang G, Zhang M, Hu M, Huang Y. Human Exposure to Ambient Atmospheric Microplastics in a Megacity: Spatiotemporal Variation and Associated Microorganism-Related Health Risk. Environmental Science & Technology [Internet]. 2024;58:3702-3713. 访问链接Abstract
Microplastics are found in various human tissues and are considered harmful, raising concerns about human exposure to microplastics in the environment. Existing research has analyzed indoor and occupational scenarios, but long-term monitoring of ambient atmospheric microplastics (AMPs), especially in highly polluted urban regions, needs to be further investigated. This study estimated human environmental exposure to AMPs by considering inhalation, dust ingestion, and dermal exposure in three urban functional zones within a megacity. The annual exposure quantity was 7.37 * 104 items for children and 1.06 * 105 items for adults, comparable with the human microplastic consumption from food and water. Significant spatiotemporal differences were observed in the characteristics of AMPs that humans were exposed to, with wind speed and rainfall frequency mainly driving these changes. The annual human AMP exposure quantity in urban green land spaces, which were recognized as relatively low polluted zones, was comparable with that in public service zones and residential zones. Notably, significant positive correlations between the AMP characteristics and the pathogenicity of the airborne bacterial community were discovered. AMP size and immune-mediated disease risks brought by atmospheric microbes showed the most significant relationship, where Sphingomonas might act as the potential key mediator.
Wu D, Wu X, Qu T. A HYBRID DEEP-ONLINE LEARNING BASED METHOD FOR ACTIVE NOISE CONTROLIN WAVE DOMAIN, in International Conference on Acoustics, Speech and Signal Processing (ICASSP). COEX, Seoul, Korea; 2024.
Zhou Y, Shao H, Zhu R, Luo W, Huang W, Shan L, HUANG R, Tang K. Hybrid-FE-Layer FeFET With High Linearity and Endurance Toward On-Chip CIM by Array Demonstration. IEEE Electron Device Letters. 2024;45:276-279.
Hydrolysis reactivity reveals significant seasonal variation in the composition of organic peroxides in ambient PM2.5
Dai YS, Chen ZM, Qin X, Dong P, Xu JY, Hu JC, Gu LH, Chen SY. Hydrolysis reactivity reveals significant seasonal variation in the composition of organic peroxides in ambient PM2.5. Science of the Total Environment [Internet]. 2024;927:172143. 访问链接Abstract
Atmospheric organic peroxides (POs) play a key role in the formation of O3 and secondary organic aerosol (SOA), impacting both air quality and human health. However, there still remain technical challenges in investigating the reactivity of POs in ambient aerosols due to the instability and lack of standards for POs, impeding accurate evaluation of their environmental impacts. In the present study, we conducted the first attempt to categorize and quantify POs in ambient PM2.5 through hydrolysis, which is an important transformation pathway for POs, thus revealing the reactivities of various POs. POs were generally categorized into hydrolyzable POs (HPO) and unhydrolyzable POs (UPO). HPO were further categorized into three groups: short-lifetime HPO (S-HPO), intermediate-lifetime HPO (I-HPO), and long-lifetime HPO (L-HPO). S-HPO and L-HPO are typically formed from Criegee intermediate (CI) and RO2 radical reactions, respectively. Results show that L-HPO are the most abundant HPO, indicating the dominant role of RO2 pathway in HPO formation. Despite their lower concentration compared to L-HPO, S-HPO make a major contribution to the HPO hydrolysis rate due to their faster rate constants. The hydrolysis of PM2.5 POs accounts for 19% of the nighttime gas-phase H2O2 growth during the summer observation, constituting a noteworthy source of gas-phase H2O2 and contributing to the atmospheric oxidation capacity. Seasonal and weather conditions significantly impact the composition of POs, with HPO concentrations in summer being significantly higher than those in winter and elevated under rainy and nighttime conditions. POs are mainly composed of HPO in summer, while in winter, POs are dominated by UPO.
Shao H, Fu B, Yang J, Luo W, Su C, Fu Z, Tang K, HUANG R. IMCE: An In-Memory Computing and Encrypting Hardware Architecture for Robust Edge Security, in 2024 Design, Automation & Test in Europe Conference & Exhibition (DATE).; 2024:1-6.
Gu J. The impact of national tourism day festivals on inbound tourism: A spatial difference-in-differences approach. Tourism Economics [Internet]. 2024;30(2):417-441. 访问链接Abstract
A comprehensive and accurate assessment of the policy effect of national tourism days is of great significance to further promote urban inbound tourism. Based on the panel data of 59 cities in China from 2000 to 2017, this paper evaluates the local and spatial spillover effects of the China Tourism Day policy on urban inbound tourism using a spatial difference-in-differences model based on the establishment of the China Tourism Day as a quasi-natural experiment. The study found that the China Tourism Day policy significantly increased the number of foreign tourists in cities but significantly reduced their average length of stay, with a positive spatial spillover effect on inbound tourism in surrounding cities.
Gu J. The Impact of Regional Patent Policies on University Technology Transfer: Empirical Evidence from China. Journal of the Knowledge Economy [Internet]. 2024;000(000):1-27. 访问链接Abstract
The low commercialization rate of academic patents is a common challenge for developing countries. This study evaluates the impact of provincial policies on the commercialization of academic patents using spatial regression models and propensity score matching methods. It also provides a reference for optimizing university patent management. Considering provincial patent policies enacted in China in 2016 as the treatment, the results show no significant effect of provincial patent policies on rights definition and implementation economics on the commercialization of academic patents. However, promotion standard policies have a significant positive effect on the commercialization of academic patents. A significant negative spatial spillover effect is observed on the commercialization of academic patents among universities with similar innovation capabilities. Furthermore, non-geographic distances, such as innovation distance, positively affect competition among universities and their commercialization of academic patents. Therefore, local governments should consider the needs of academic inventors for title promotion when designing and introducing patent incentive policies for universities.
Zhu R, Zhou Y, Sun C, Huang W, Dong J, HUANG R, Tang K. Improved Memory Density and Endurance by a Novel 1T3C FeFET for BEOL Multi-level Cell Memory, in 2024 8th IEEE Electron Devices Technology & Manufacturing Conference (EDTM).; 2024:1-3.
Chen Z, Ma Y, Li K, Jia Y, Li G, Wu M, Jia T, Ye L, HUANG R. An In-Memory Computing Accelerator with Reconfigurable Dataflow for Multi-Scale Vision Transformer with Hybrid Topology, in Design Automation Conference (DAC).; 2024.
Chen Z, Ma* Y, Li K, Jia Y, Li G, Wu M, Jia T, Ye L, HUANG R. An In-Memory Computing Accelerator with Reconfigurable Dataflow for Multi-Scale Vision Transformer with Hybrid Topology. ACM/IEEE Design Automation Conference (DAC). 2024.
Pan Z, Trusler MJP, Jin Z, Zhang K. Interfacial property determination from dynamic pendant-drop characterizations. Nature Protocols [Internet]. 2024. 访问链接Abstract
The properties of the interface between materials have practical implications in various fields, encompassing capillary action, foam and emulsion stability, adhesion properties of materials and mass and heat transfer processes. Studying the dynamics of interfaces is also fundamental for understanding intermolecular interactions, change of molecular conformations and molecular aggregations. Pendant-drop tensiometry and its extension, the oscillating drop method, are simple, versatile methods used to measure surface tension, interfacial tension and interfacial rheological properties. These methods can, however, generate unreliable results because of inadequate material preparation, an incorrect calibration method, inappropriate selection of data for analysis, neglect of optical influences or operating the system outside the linear viscoelastic regime. In addition, many studies fail to report accurate uncertainties. This protocol addresses all these critical points and provides detailed descriptions of some operation tips relating to purifying methods for different kinds of material, the time frame for analyzing measurement data, the correction method for optical effects, implementation of the oscillating method with a common programmable pump and remedies for some common problems encountered during the measurement. Examples of interfacial tension measurements for two- and three-phase systems, as well as interfacial dilational modulus measurements for N2 and surfactant solutions, are provided to illustrate procedural details and results. A single measurement takes minutes to hours to complete, while the entire protocol, including the leak test, cleaning, repeated measurements and data analysis, may take several days.

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